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{ stdenv, fetchFromGitHub, cmake, makeWrapper, flex, bison, perl, TextFormat,
libminc, libjpeg, nifticlib, zlib }:
stdenv.mkDerivation rec {
pname = "minc-tools";
version = "unstable-2019-12-04";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "d4dddfdb4e4fa0cea389b8fdce51cfc076565d94";
sha256 = "1wwdss59qq4hz1jp35qylfswzzv0d37if23al0srnxkkgc5f8zng";
};
patches = [ ./fix-netcdf-header.patch ];
# add missing CMake module to build NIFTI support
# (the maintainers normally build libminc and minc-tools in a meta-project)
postPatch = ''
cp ${libminc.src}/cmake-modules/FindNIFTI.cmake cmake-modules
'';
nativeBuildInputs = [ cmake flex bison makeWrapper ];
buildInputs = [ libminc libjpeg nifticlib zlib ];
propagatedBuildInputs = [ perl TextFormat ];
cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/"
"-DZNZ_INCLUDE_DIR=${nifticlib}/include/nifti"
"-DNIFTI_INCLUDE_DIR=${nifticlib}/include/nifti" ];
postFixup = ''
for prog in minccomplete minchistory mincpik; do
wrapProgram $out/bin/$prog --prefix PERL5LIB : $PERL5LIB
done
'';
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = "https://github.com/BIC-MNI/minc-tools";
description = "Command-line utilities for working with MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}
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