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{ stdenv, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
stdenv.mkDerivation rec {
pname = "delly";
version = "0.8.1";
src = fetchFromGitHub {
owner = "dellytools";
repo = pname;
rev = "v${version}";
sha256 = "18gm86j1g1k4z1cjv2m5v9rsl1xqs2w3dhwcsnzx2mhkrvmlc4i1";
};
buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
EBROOTHTSLIB = htslib;
installPhase = ''
runHook preInstall
install -Dm555 src/delly $out/bin/delly
runHook postInstall
'';
meta = with stdenv.lib; {
description = "Structural variant caller for mapped DNA sequenced data";
license = licenses.gpl3;
maintainers = with maintainers; [ scalavision ];
platforms = platforms.linux;
longDescription = ''
Delly is an integrated structural variant (SV) prediction method
that can discover, genotype and visualize deletions, tandem duplications,
inversions and translocations at single-nucleotide resolution in
short-read massively parallel sequencing data. It uses paired-ends,
split-reads and read-depth to sensitively and accurately delineate
genomic rearrangements throughout the genome.
'';
};
}
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