Merge commit '1c40ee6fc44f7eb474c69ea070a43247a1a2c83c'

6 files changed, 32 insertions, 7 deletions

diff --git a/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix b/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix
index f0f5829ce46..5a17e807bd4 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix
@@ -46,7 +46,7 @@ stdenv.mkDerivation {
 
   passthru = {
     inherit cudatoolkit;
-    majorVersion = lib.head (lib.splitString "." version);
+    majorVersion = lib.versions.major version;
   };
 
   meta = with stdenv.lib; {
diff --git a/nixpkgs/pkgs/development/libraries/science/math/lcalc/makefile.patch b/nixpkgs/pkgs/development/libraries/science/math/lcalc/makefile.patch
index f55bbe3f24f..5c22cf0b84e 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/lcalc/makefile.patch
+++ b/nixpkgs/pkgs/development/libraries/science/math/lcalc/makefile.patch
@@ -104,10 +104,10 @@ index 84e4e88..56ca676 100644
 -	cp -rf ../include $(INSTALL_DIR)/include/Lfunction
 +	install -d $(INSTALL_DIR)/bin
 +	install -d $(INSTALL_DIR)/$(LIB_DIR)
-+	install -d $(INSTALL_DIR)/include/libLfunction
++	install -d $(INSTALL_DIR)/include/Lfunction
 +	install lcalc $(INSTALL_DIR)/bin
 +	install libLfunction.so $(INSTALL_DIR)/$(LIB_DIR)
-+	install -m 644 -t $(INSTALL_DIR)/include/libLfunction ../include/*.h
++	install -m 644 -t $(INSTALL_DIR)/include/Lfunction ../include/*.h
  
  
  SRCS = Lcommandline.cc Lcommandline_elliptic.cc Lcommandline_globals.cc Lcommandline_misc.cc Lcommandline_numbertheory.cc Lcommandline_twist.cc Lcommandline_values_zeros.cc Lgamma.cc Lglobals.cc Lmisc.cc Lriemannsiegel.cc Lriemannsiegel_blfi.cc cmdline.c
diff --git a/nixpkgs/pkgs/development/libraries/science/math/or-tools/build.patch b/nixpkgs/pkgs/development/libraries/science/math/or-tools/build.patch
new file mode 100644
index 00000000000..a67e137ff4a
--- /dev/null
+++ b/nixpkgs/pkgs/development/libraries/science/math/or-tools/build.patch
@@ -0,0 +1,5 @@
+--- a/makefiles/Makefile.python.mk
++++ b/makefiles/Makefile.python.mk
+@@ -1070 +1070 @@ $(PYPI_ARCHIVE_TEMP_DIR)/ortools/ortools/data: $(PYDATA_LIBS) | $(PYPI_ARCHIVE_T
+-$(PYPI_ARCHIVE_TEMP_DIR)/ortools/ortools/util: $(PYUTIL_LIBS) | $(PYPI_ARCHIVE_TEMP_DIR)/ortools/ortools
++$(PYPI_ARCHIVE_TEMP_DIR)/ortools/ortools/util: $(PYSORTED_INTERVAL_LIST_LIBS) | $(PYPI_ARCHIVE_TEMP_DIR)/ortools/ortools
diff --git a/nixpkgs/pkgs/development/libraries/science/math/or-tools/default.nix b/nixpkgs/pkgs/development/libraries/science/math/or-tools/default.nix
index c6e065320a2..224f4239a22 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/or-tools/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/or-tools/default.nix
@@ -5,15 +5,20 @@
 
 stdenv.mkDerivation rec {
   pname = "or-tools";
-  version = "v7.0";
+  version = "7.3";
 
   src = fetchFromGitHub {
     owner = "google";
     repo = "or-tools";
-    rev = version;
-    sha256 = "09rs2j3w4ljw9qhhnsjlvfii297njjszwvkbgj1i6kns3wnlr7cp";
+    rev = "v${version}";
+    sha256 = "0q06vxmds6nm3dpjw4y5jzr8j98qgfb9i8pbm9pfhmqigv791hwc";
   };
 
+  patches = [
+    ./build.patch # https://github.com/google/or-tools/pull/1619
+    ./protobuf.patch # Otherwise it tries to install protobuf from pypi.
+  ];
+
   # The original build system uses cmake which does things like pull
   # in dependencies through git and Makefile creation time. We
   # obviously don't want to do this so instead we provide the
diff --git a/nixpkgs/pkgs/development/libraries/science/math/or-tools/protobuf.patch b/nixpkgs/pkgs/development/libraries/science/math/or-tools/protobuf.patch
new file mode 100644
index 00000000000..b0cce40434c
--- /dev/null
+++ b/nixpkgs/pkgs/development/libraries/science/math/or-tools/protobuf.patch
@@ -0,0 +1,10 @@
+--- a/makefiles/Makefile.third_party.unix.mk
++++ b/makefiles/Makefile.third_party.unix.mk
+@@ -24,1 +24,1 @@ GLOG_TAG = 0.4.0
+-PROTOBUF_TAG = 3.9.0
++PROTOBUF_TAG = 3.7.0
+--- a/makefiles/Makefile.third_party.win.mk
++++ b/makefiles/Makefile.third_party.win.mk
+@@ -40 +40 @@ GLOG_TAG = 0.4.0
+-PROTOBUF_TAG = 3.9.0
++PROTOBUF_TAG = 3.7.0
diff --git a/nixpkgs/pkgs/development/libraries/science/math/tensorflow/bin.nix b/nixpkgs/pkgs/development/libraries/science/math/tensorflow/bin.nix
index 3db7a6f1d1e..f9f300883a1 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/tensorflow/bin.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/tensorflow/bin.nix
@@ -1,6 +1,6 @@
 { stdenv
 , fetchurl
-, patchelf
+, addOpenGLRunpath
 , cudaSupport ? false, symlinkJoin, cudatoolkit, cudnn, nvidia_x11
 }:
 
@@ -35,6 +35,9 @@ let
     else ''
       patchelf --set-rpath "${rpath}:$out/lib" $out/lib/libtensorflow.so
       patchelf --set-rpath "${rpath}" $out/lib/libtensorflow_framework.so
+      ${optionalString cudaSupport ''
+        addOpenGLRunpath $out/lib/libtensorflow.so $out/lib/libtensorflow_framework.so
+      ''}
     '';
 
 in stdenv.mkDerivation rec {
@@ -43,6 +46,8 @@ in stdenv.mkDerivation rec {
 
   src = fetchurl url;
 
+  nativeBuildInputs = optional cudaSupport addOpenGLRunpath;
+
   # Patch library to use our libc, libstdc++ and others
   buildCommand = ''
     mkdir -pv $out