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authorKatharina Fey <kookie@spacekookie.de>2020-05-20 01:39:43 +0200
committerKatharina Fey <kookie@spacekookie.de>2020-05-20 01:39:43 +0200
commit1849de11ec1e32e9eebb83f24d5339bea88b7ed7 (patch)
tree0aaf3cead09c2d55c67c6f6a86ad20af399797d8 /nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix
parent304c06d7a7ea3f5c84031d325ece8d38b8c1d829 (diff)
parent0f5ce2fac0c726036ca69a5524c59a49e2973dd4 (diff)
Merge commit '0f5ce2fac0c726036ca69a5524c59a49e2973dd4'
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix')
-rw-r--r--nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix15
1 files changed, 10 insertions, 5 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix b/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix
index 13f00c53fe6..0a31ff6ba4f 100644
--- a/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix
+++ b/nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, zlib, openblas, darwin}:
+{ stdenv, fetchFromGitHub, zlib, blas, lapack, darwin}:
stdenv.mkDerivation rec {
pname = "plink-ng";
@@ -11,14 +11,20 @@ stdenv.mkDerivation rec {
sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq";
};
- buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ;
+ buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ blas lapack ]) ;
- buildPhase = ''
+ preBuild = ''
sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h
${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""}
- make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std
+
+ makeFlagsArray+=(
+ ZLIB=-lz
+ BLASFLAGS="-lblas -lcblas -llapack"
+ );
'';
+ makefile = "Makefile.std";
+
installPhase = ''
mkdir -p $out/bin
cp plink $out/bin
@@ -31,4 +37,3 @@ stdenv.mkDerivation rec {
platforms = stdenv.lib.platforms.linux;
};
}
-