diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/mosdepth/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/mosdepth/default.nix | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/mosdepth/default.nix b/nixpkgs/pkgs/applications/science/biology/mosdepth/default.nix index 21af5b82207..1ce6357d2e8 100644 --- a/nixpkgs/pkgs/applications/science/biology/mosdepth/default.nix +++ b/nixpkgs/pkgs/applications/science/biology/mosdepth/default.nix @@ -26,14 +26,15 @@ in stdenv.mkDerivation rec { sha256 = "01gm9gj2x2zs4yx6wk761fi1papi7qr3gp4ln1kkn8n2f9y9h849"; }; - buildInputs = [ nim ]; + nativeBuildInputs = [ nim ]; + buildInputs = [ htslib pcre ]; buildPhase = '' HOME=$TMPDIR nim -p:${hts-nim}/src -p:${docopt}/src c --nilseqs:on -d:release mosdepth.nim ''; + installPhase = "install -Dt $out/bin mosdepth"; - fixupPhase = "patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ stdenv.cc.cc htslib pcre ]} $out/bin/mosdepth"; meta = with stdenv.lib; { description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing."; |