diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/hisat2/default.nix')
| -rw-r--r-- | nixpkgs/pkgs/applications/science/biology/hisat2/default.nix | 20 |
1 files changed, 8 insertions, 12 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/hisat2/default.nix b/nixpkgs/pkgs/applications/science/biology/hisat2/default.nix index fb7f2cba3de..e641489b86c 100644 --- a/nixpkgs/pkgs/applications/science/biology/hisat2/default.nix +++ b/nixpkgs/pkgs/applications/science/biology/hisat2/default.nix @@ -1,16 +1,18 @@ -{stdenv, fetchurl, unzip, which, python, perl}: +{stdenv, fetchFromGitHub, unzip, which, python3, perl}: stdenv.mkDerivation rec { pname = "hisat2"; - version = "2.1.0"; + version = "2.2.1"; - src = fetchurl { - url = "ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-${version}-source.zip"; - sha256 = "10g73sdf6vqqfhhd92hliw7bbpkb8v4pp5012r5l21zws7p7d8l9"; + src = fetchFromGitHub { + owner = "DaehwanKimLab"; + repo = "hisat2"; + rev = "v${version}"; + sha256 = "0lmzdhzjkvxw7n5w40pbv5fgzd4cz0f9pxczswn3d4cr0k10k754"; }; nativeBuildInputs = [ unzip which ]; - buildInputs = [ python perl ]; + buildInputs = [ python3 perl ]; installPhase = '' mkdir -p $out/bin @@ -30,12 +32,6 @@ stdenv.mkDerivation rec { hisat2_extract_snps_haplotypes_VCF.py \ hisat2_extract_splice_sites.py \ hisat2_simulate_reads.py \ - hisatgenotype_build_genome.py \ - hisatgenotype_extract_reads.py \ - hisatgenotype_extract_vars.py \ - hisatgenotype_hla_cyp.py \ - hisatgenotype_locus.py \ - hisatgenotype.py \ $out/bin ''; |