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{ lib
, fetchPypi
, buildPythonPackage
, pythonOlder
, Theano
, pandas
, patsy
, joblib
, tqdm
, six
, h5py
, arviz
, packaging
, pytest
, nose
, parameterized
}:
buildPythonPackage rec {
pname = "pymc3";
version = "3.9.3";
disabled = pythonOlder "3.5";
src = fetchPypi {
inherit pname version;
sha256 = "abe046f5a5d0e5baee80b7c4bc0a4c218f61b517b62d77be4f89cf4784c27d78";
};
# No need for coverage stats in Nix builds
postPatch = ''
substituteInPlace setup.py --replace ", 'pytest-cov'" ""
'';
propagatedBuildInputs = [
Theano
pandas
patsy
joblib
tqdm
six
h5py
arviz
packaging
];
checkInputs = [
pytest
nose
parameterized
];
# The test suite is computationally intensive and test failures are not
# indicative for package usability hence tests are disabled by default.
doCheck = false;
# For some reason tests are run as a part of the *install* phase if enabled.
# Theano writes compiled code to ~/.theano hence we set $HOME.
preInstall = "export HOME=$(mktemp -d)";
postInstall = "rm -rf $HOME";
meta = {
description = "Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC)";
homepage = "https://github.com/pymc-devs/pymc3";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ ilya-kolpakov ];
};
}
|
