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{ lib, fetchFromGitHub, buildPythonPackage, isPy27, numpy, cython, zlib, six
, python-lzo, nose }:
buildPythonPackage rec {
pname = "bx-python";
version = "0.8.9";
disabled = isPy27;
src = fetchFromGitHub {
owner = "bxlab";
repo = "bx-python";
rev = "v${version}";
sha256 = "0bsqnw8rv08586wksvx2a8dawvhyzvz5pzsh9y3217b6wxq98dnq";
};
nativeBuildInputs = [ cython ];
buildInputs = [ zlib ];
propagatedBuildInputs = [ numpy six python-lzo ];
checkInputs = [ nose ];
postInstall = ''
cp -r scripts/* $out/bin
# This is a small hack; the test suit uses the scripts which need to
# be patched. Linking the patched scripts in $out back to the
# working directory allows the tests to run
rm -rf scripts
ln -s $out/bin scripts
'';
meta = with lib; {
homepage = "https://github.com/bxlab/bx-python";
description =
"Tools for manipulating biological data, particularly multiple sequence alignments";
license = licenses.mit;
maintainers = [ maintainers.jbedo ];
platforms = [ "x86_64-linux" ];
};
}
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