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{ stdenv, buildPythonPackage, fetchFromGitHub, cython, numpy, pysam, matplotlib, python, isPy27, isPy3k }:
buildPythonPackage rec {
version = "0.12.4";
pname = "HTSeq";
src = fetchFromGitHub {
owner = "htseq";
repo = "htseq";
rev = "release_${version}";
sha256 = "0y7vh249sljqjnv81060w4xkdx6f1y5zdqkh38yk926x6v9riijm";
};
nativeBuildInputs = [ cython ];
propagatedBuildInputs = [ numpy pysam matplotlib ];
checkPhase = stdenv.lib.optionalString isPy27 ''
${python.interpreter} python2/test/test_general.py
'' + stdenv.lib.optionalString isPy3k ''
${python.interpreter} python3/test/test_general.py
'';
meta = with stdenv.lib; {
homepage = "https://htseq.readthedocs.io/";
description = "A framework to work with high-throughput sequencing data";
maintainers = with maintainers; [ unode ];
platforms = platforms.unix;
};
}
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