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{ stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }:
stdenv.mkDerivation rec {
pname = "samtools";
version = "1.11";
src = fetchurl {
url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";
sha256 = "1dp5wknak4arnw5ghhif9mmljlfnw5bgm91wib7z0j8wdjywx0z2";
};
nativeBuildInputs = [ perl ];
buildInputs = [ zlib ncurses htslib ];
configureFlags = [ "--with-htslib=${htslib}" ]
++ stdenv.lib.optional (ncurses == null) "--without-curses";
preCheck = ''
patchShebangs test/
'';
enableParallelBuilding = true;
doCheck = true;
meta = with stdenv.lib; {
description = "Tools for manipulating SAM/BAM/CRAM format";
license = licenses.mit;
homepage = "http://www.htslib.org/";
platforms = platforms.unix;
maintainers = with maintainers; [ mimame unode ];
};
}
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