blob: 10859d9e8c1382cf9c05f65492db0a53ab83b6a7 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
|
{ stdenv, fetchurl, zlib }:
stdenv.mkDerivation rec {
pname = "bwa";
version = "0.7.17";
src = fetchurl {
url = "mirror://sourceforge/bio-bwa/${pname}-${version}.tar.bz2";
sha256 = "1zfhv2zg9v1icdlq4p9ssc8k01mca5d1bd87w71py2swfi74s6yy";
};
buildInputs = [ zlib ];
# Avoid hardcoding gcc to allow environments with a different
# C compiler to build
preConfigure = ''
sed -i '/^CC/d' Makefile
'';
# it's unclear which headers are intended to be part of the public interface
# so we may find ourselves having to add more here over time
installPhase = ''
install -vD -t $out/bin bwa
install -vD -t $out/lib libbwa.a
install -vD -t $out/include bntseq.h
install -vD -t $out/include bwa.h
install -vD -t $out/include bwamem.h
install -vD -t $out/include bwt.h
'';
meta = with stdenv.lib; {
description = "A software package for mapping low-divergent sequences against a large reference genome, such as the human genome";
license = licenses.gpl3;
homepage = "http://bio-bwa.sourceforge.net/";
maintainers = with maintainers; [ luispedro ];
platforms = platforms.x86_64;
};
}
|
