1 files changed, 43 insertions, 0 deletions
diff --git a/infra/libkookie/nixpkgs/pkgs/applications/science/misc/cytoscape/default.nix b/infra/libkookie/nixpkgs/pkgs/applications/science/misc/cytoscape/default.nix
new file mode 100644
index 000000000000..647492bbe318
--- /dev/null
+++ b/infra/libkookie/nixpkgs/pkgs/applications/science/misc/cytoscape/default.nix
@@ -0,0 +1,43 @@
+{ stdenv, fetchurl, jre, makeWrapper, substituteAll, coreutils }:
+
+stdenv.mkDerivation rec {
+  pname = "cytoscape";
+  version = "3.8.2";
+
+  src = fetchurl {
+    url = "https://github.com/cytoscape/cytoscape/releases/download/${version}/${pname}-unix-${version}.tar.gz";
+    sha256 = "0zgsq9qnyvmq96pgf7372r16rm034fd0r4qa72xi9zbd4f2r7z8w";
+  };
+
+  patches = [
+    # By default, gen_vmoptions.sh tries to store custom options in $out/share
+    # at run time. This patch makes sure $HOME is used instead.
+    (substituteAll {
+      src = ./gen_vmoptions_to_homedir.patch;
+      inherit coreutils;
+    })
+  ];
+
+  buildInputs = [jre makeWrapper];
+
+  installPhase = ''
+    mkdir -pv $out/{share,bin}
+    cp -Rv * $out/share/
+
+    ln -s $out/share/cytoscape.sh $out/bin/cytoscape
+
+    wrapProgram $out/share/cytoscape.sh \
+      --set JAVA_HOME "${jre}" \
+      --set JAVA  "${jre}/bin/java"
+
+    chmod +x $out/bin/cytoscape
+  '';
+
+  meta = {
+    homepage = "http://www.cytoscape.org";
+    description = "A general platform for complex network analysis and visualization";
+    license = stdenv.lib.licenses.lgpl21;
+    maintainers = [stdenv.lib.maintainers.mimame];
+    platforms = stdenv.lib.platforms.unix;
+  };
+}