diff options
Diffstat (limited to 'infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix')
-rw-r--r-- | infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix new file mode 100644 index 000000000000..e750eea89ac9 --- /dev/null +++ b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }: + +stdenv.mkDerivation rec { + pname = "samtools"; + version = "1.10"; + + src = fetchurl { + url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2"; + sha256 = "119ms0dpydw8dkh3zc4yyw9zhdzgv12px4l2kayigv31bpqcb7kv"; + }; + + nativeBuildInputs = [ perl ]; + + buildInputs = [ zlib ncurses htslib ]; + + configureFlags = [ "--with-htslib=${htslib}" ] + ++ stdenv.lib.optional (ncurses == null) "--without-curses"; + + preCheck = '' + patchShebangs test/ + ''; + + enableParallelBuilding = true; + + doCheck = true; + + meta = with stdenv.lib; { + description = "Tools for manipulating SAM/BAM/CRAM format"; + license = licenses.mit; + homepage = "http://www.htslib.org/"; + platforms = platforms.unix; + maintainers = [ maintainers.mimame ]; + }; +} |