diff options
Diffstat (limited to 'infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix')
-rw-r--r-- | infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix index 04512e8e372e..f6267a2e017f 100644 --- a/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix +++ b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix @@ -7,13 +7,14 @@ let in stdenv.mkDerivation rec { pname = "lumpy"; - version = "0.3.0"; + version = "0.3.1"; src = fetchFromGitHub { owner = "arq5x"; repo = "lumpy-sv"; - rev = version; - sha256 = "0azhzvmh9az9jcq0xprlzdz6w16azgszv4kshb903bwbnqirmk18"; + rev = "v${version}"; + sha256 = "0r71sg7qch8r6p6dw995znrqdj6q49hjdylhzbib2qmv8nvglhs9"; + fetchSubmodules = true; }; nativeBuildInputs = [ which ]; @@ -26,6 +27,8 @@ in stdenv.mkDerivation rec { # Use Nix htslib over bundled version sed -i 's/lumpy_filter: htslib/lumpy_filter:/' Makefile sed -i 's|../../lib/htslib/libhts.a|-lhts|' src/filter/Makefile + # Also make sure we use the includes from Nix's htslib + sed -i 's|../../lib/htslib/|${htslib}|' src/filter/Makefile ''; # Upstream's makefile doesn't have an install target |