1 files changed, 30 insertions, 0 deletions
diff --git a/infra/libkookie/nixpkgs/pkgs/applications/science/biology/kallisto/default.nix b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/kallisto/default.nix
new file mode 100644
index 000000000000..014ae14cc794
--- /dev/null
+++ b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/kallisto/default.nix
@@ -0,0 +1,30 @@
+{ stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
+
+stdenv.mkDerivation rec {
+  pname = "kallisto";
+  version = "0.46.2";
+
+  src = fetchFromGitHub {
+    repo = "kallisto";
+    owner = "pachterlab";
+    rev = "v${version}";
+    sha256 = "0m0r2820ca3rch99md1zzbgkilmlfkhdkpys2lfnb87qxmf1jnmb";
+  };
+
+  nativeBuildInputs = [ autoconf cmake ];
+
+  buildInputs = [ hdf5 zlib ];
+
+  cmakeFlags = [ "-DUSE_HDF5=ON" ];
+
+  # Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
+  enableParallelBuilding = false;
+
+  meta = with stdenv.lib; {
+    description = "Program for quantifying abundances of transcripts from RNA-Seq data";
+    homepage = "https://pachterlab.github.io/kallisto";
+    license = licenses.bsd2;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ arcadio ];
+  };
+}