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author | Mx Kookie <kookie@spacekookie.de> | 2020-12-09 18:55:19 +0000 |
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committer | Mx Kookie <kookie@spacekookie.de> | 2020-12-09 18:55:19 +0000 |
commit | 80d90d9b204f7c17912740f9f414fe5d59f293ba (patch) | |
tree | 5f2065a06e724270610760d59d01c6888b375a46 /infra/libkookie/nixpkgs/pkgs/development/python-modules/HTSeq/default.nix | |
parent | 3a31a84c7d3e589035ad08499206aac44a81f424 (diff) | |
parent | 83cbad92d73216bb0d9187c56cce0b91f9121d5a (diff) |
Merge commit '83cbad92d73216bb0d9187c56cce0b91f9121d5a' into main
Diffstat (limited to 'infra/libkookie/nixpkgs/pkgs/development/python-modules/HTSeq/default.nix')
-rw-r--r-- | infra/libkookie/nixpkgs/pkgs/development/python-modules/HTSeq/default.nix | 20 |
1 files changed, 14 insertions, 6 deletions
diff --git a/infra/libkookie/nixpkgs/pkgs/development/python-modules/HTSeq/default.nix b/infra/libkookie/nixpkgs/pkgs/development/python-modules/HTSeq/default.nix index abb0c8520dd0..83263f734bd4 100644 --- a/infra/libkookie/nixpkgs/pkgs/development/python-modules/HTSeq/default.nix +++ b/infra/libkookie/nixpkgs/pkgs/development/python-modules/HTSeq/default.nix @@ -1,18 +1,26 @@ -{ stdenv, buildPythonPackage, fetchPypi, cython, numpy, pysam, matplotlib -}: +{ stdenv, buildPythonPackage, fetchFromGitHub, cython, numpy, pysam, matplotlib, python, isPy27, isPy3k }: buildPythonPackage rec { version = "0.12.4"; pname = "HTSeq"; - src = fetchPypi { - inherit pname version; - sha256 = "e3980bb4f12899442b4fa6f24f0ba149090f71cedb1eaf7128249afe4eb921ff"; + src = fetchFromGitHub { + owner = "htseq"; + repo = "htseq"; + rev = "release_${version}"; + sha256 = "0y7vh249sljqjnv81060w4xkdx6f1y5zdqkh38yk926x6v9riijm"; }; - buildInputs = [ cython numpy pysam ]; + nativeBuildInputs = [ cython ]; propagatedBuildInputs = [ numpy pysam matplotlib ]; + checkPhase = stdenv.lib.optionalString isPy27 '' + ${python.interpreter} python2/test/test_general.py + '' + stdenv.lib.optionalString isPy3k '' + ${python.interpreter} python3/test/test_general.py + ''; + meta = with stdenv.lib; { + homepage = "https://htseq.readthedocs.io/"; description = "A framework to work with high-throughput sequencing data"; maintainers = with maintainers; [ unode ]; platforms = platforms.unix; |