diff options
author | Mx Kookie <kookie@spacekookie.de> | 2020-10-31 19:35:09 +0100 |
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committer | Mx Kookie <kookie@spacekookie.de> | 2020-10-31 19:35:09 +0100 |
commit | c4625b175f8200f643fd6e11010932ea44c78433 (patch) | |
tree | bce3f89888c8ac3991fa5569a878a9eab6801ccc /infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix | |
parent | 49f735974dd103039ddc4cb576bb76555164a9e7 (diff) | |
parent | d661aa56a8843e991261510c1bb28fdc2f6975ae (diff) |
Add 'infra/libkookie/' from commit 'd661aa56a8843e991261510c1bb28fdc2f6975ae'
git-subtree-dir: infra/libkookie
git-subtree-mainline: 49f735974dd103039ddc4cb576bb76555164a9e7
git-subtree-split: d661aa56a8843e991261510c1bb28fdc2f6975ae
Diffstat (limited to 'infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix')
-rw-r--r-- | infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix new file mode 100644 index 000000000000..e750eea89ac9 --- /dev/null +++ b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/samtools/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }: + +stdenv.mkDerivation rec { + pname = "samtools"; + version = "1.10"; + + src = fetchurl { + url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2"; + sha256 = "119ms0dpydw8dkh3zc4yyw9zhdzgv12px4l2kayigv31bpqcb7kv"; + }; + + nativeBuildInputs = [ perl ]; + + buildInputs = [ zlib ncurses htslib ]; + + configureFlags = [ "--with-htslib=${htslib}" ] + ++ stdenv.lib.optional (ncurses == null) "--without-curses"; + + preCheck = '' + patchShebangs test/ + ''; + + enableParallelBuilding = true; + + doCheck = true; + + meta = with stdenv.lib; { + description = "Tools for manipulating SAM/BAM/CRAM format"; + license = licenses.mit; + homepage = "http://www.htslib.org/"; + platforms = platforms.unix; + maintainers = [ maintainers.mimame ]; + }; +} |