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author | Mx Kookie <kookie@spacekookie.de> | 2020-12-09 18:55:19 +0000 |
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committer | Mx Kookie <kookie@spacekookie.de> | 2020-12-09 18:55:19 +0000 |
commit | 80d90d9b204f7c17912740f9f414fe5d59f293ba (patch) | |
tree | 5f2065a06e724270610760d59d01c6888b375a46 /infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix | |
parent | 3a31a84c7d3e589035ad08499206aac44a81f424 (diff) | |
parent | 83cbad92d73216bb0d9187c56cce0b91f9121d5a (diff) |
Merge commit '83cbad92d73216bb0d9187c56cce0b91f9121d5a' into main
Diffstat (limited to 'infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix')
-rw-r--r-- | infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix index 04512e8e372e..f6267a2e017f 100644 --- a/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix +++ b/infra/libkookie/nixpkgs/pkgs/applications/science/biology/lumpy/default.nix @@ -7,13 +7,14 @@ let in stdenv.mkDerivation rec { pname = "lumpy"; - version = "0.3.0"; + version = "0.3.1"; src = fetchFromGitHub { owner = "arq5x"; repo = "lumpy-sv"; - rev = version; - sha256 = "0azhzvmh9az9jcq0xprlzdz6w16azgszv4kshb903bwbnqirmk18"; + rev = "v${version}"; + sha256 = "0r71sg7qch8r6p6dw995znrqdj6q49hjdylhzbib2qmv8nvglhs9"; + fetchSubmodules = true; }; nativeBuildInputs = [ which ]; @@ -26,6 +27,8 @@ in stdenv.mkDerivation rec { # Use Nix htslib over bundled version sed -i 's/lumpy_filter: htslib/lumpy_filter:/' Makefile sed -i 's|../../lib/htslib/libhts.a|-lhts|' src/filter/Makefile + # Also make sure we use the includes from Nix's htslib + sed -i 's|../../lib/htslib/|${htslib}|' src/filter/Makefile ''; # Upstream's makefile doesn't have an install target |