{ lib , python , buildPythonPackage , fetchpatch , fetchPypi , isPyPy , R , rWrapper , rPackages , pcre , lzma , bzip2 , zlib , icu , ipython , jinja2 , pytz , pandas , numpy , cffi , tzlocal , simplegeneric , pytest , extraRPackages ? [] }: buildPythonPackage rec { version = "3.3.6"; pname = "rpy2"; disabled = isPyPy; src = fetchPypi { inherit version pname; sha256 = "0xvfkxvh01r5ibd5mpisp8bz385hgpn27b988y8v65z7hqr3y1nf"; }; buildInputs = [ R pcre lzma bzip2 zlib icu # is in the upstream `requires` although it shouldn't be -- this is easier than patching it away pytest ] ++ (with rPackages; [ # packages expected by the test framework ggplot2 dplyr RSQLite broom DBI dbplyr hexbin lazyeval lme4 tidyr ]) ++ extraRPackages ++ rWrapper.recommendedPackages; checkPhase = '' pytest ''; nativeBuildInputs = [ R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly) ]; patches = [ # R_LIBS_SITE is used by the nix r package to point to the installed R libraries. # This patch sets R_LIBS_SITE when rpy2 is imported. ./rpy2-3.x-r-libs-site.patch ]; postPatch = '' substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE" ''; propagatedBuildInputs = [ ipython jinja2 pytz pandas numpy cffi tzlocal simplegeneric ]; checkInputs = [ pytest ]; meta = { homepage = "https://rpy2.github.io/"; description = "Python interface to R"; license = lib.licenses.gpl2Plus; platforms = lib.platforms.unix; maintainers = with lib.maintainers; [ joelmo ]; }; }