{ lib , fetchPypi , python , buildPythonPackage , gfortran , hypothesis , pytest_5 , blas , lapack , writeTextFile , isPyPy , cython , setuptoolsBuildHook , fetchpatch }: assert (!blas.isILP64) && (!lapack.isILP64); let cfg = writeTextFile { name = "site.cfg"; text = (lib.generators.toINI {} { ${blas.implementation} = { include_dirs = "${lib.getDev blas}/include:${lib.getDev lapack}/include"; library_dirs = "${blas}/lib:${lapack}/lib"; runtime_library_dirs = "${blas}/lib:${lapack}/lib"; libraries = "lapack,lapacke,blas,cblas"; }; lapack = { include_dirs = "${lib.getDev lapack}/include"; library_dirs = "${lapack}/lib"; runtime_library_dirs = "${lapack}/lib"; }; blas = { include_dirs = "${lib.getDev blas}/include"; library_dirs = "${blas}/lib"; runtime_library_dirs = "${blas}/lib"; }; }); }; in buildPythonPackage rec { pname = "numpy"; version = "1.19.4"; format = "pyproject.toml"; src = fetchPypi { inherit pname version; extension = "zip"; sha256 = "141ec3a3300ab89c7f2b0775289954d193cc8edb621ea05f99db9cb181530512"; }; nativeBuildInputs = [ gfortran cython setuptoolsBuildHook ]; buildInputs = [ blas lapack ]; patches = [ # For compatibility with newer pytest (fetchpatch { url = "https://github.com/numpy/numpy/commit/ba315034759fbf91c61bb55390edc86e7b2627f3.patch"; sha256 = "F2P5q61CyhqsZfwkLmxb7A9YdE+43FXLbQkSjop2rVY="; }) ] ++ lib.optionals python.hasDistutilsCxxPatch [ # We patch cpython/distutils to fix https://bugs.python.org/issue1222585 # Patching of numpy.distutils is needed to prevent it from undoing the # patch to distutils. ./numpy-distutils-C++.patch ]; # we default openblas to build with 64 threads # if a machine has more than 64 threads, it will segfault # see https://github.com/xianyi/OpenBLAS/issues/2993 preConfigure = '' sed -i 's/-faltivec//' numpy/distutils/system_info.py export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES export OMP_NUM_THREADS=$((NIX_BUILD_CORES > 64 ? 64 : NIX_BUILD_CORES)) ''; preBuild = '' ln -s ${cfg} site.cfg ''; enableParallelBuilding = true; doCheck = !isPyPy; # numpy 1.16+ hits a bug in pypy's ctypes, using either numpy or pypy HEAD fixes this (https://github.com/numpy/numpy/issues/13807) checkInputs = [ pytest_5 # pytest 6 will error: "module is already imported: hypothesis" hypothesis ]; checkPhase = '' runHook preCheck pushd dist ${python.interpreter} -c 'import numpy; numpy.test("fast", verbose=10)' popd runHook postCheck ''; passthru = { # just for backwards compatibility blas = blas.provider; blasImplementation = blas.implementation; inherit cfg; }; # Disable test # - test_large_file_support: takes a long time and can cause the machine to run out of disk space NOSE_EXCLUDE="test_large_file_support"; meta = { description = "Scientific tools for Python"; homepage = "https://numpy.org/"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ fridh ]; }; }