{ stdenv, fetchPypi, isPy27, python, buildPythonPackage, pythonOlder , numpy, hdf5, cython, six, pkgconfig, unittest2, fetchpatch , mpi4py ? null, openssh, pytestCheckHook, cached-property }: assert hdf5.mpiSupport -> mpi4py != null && hdf5.mpi == mpi4py.mpi; with stdenv.lib; let mpi = hdf5.mpi; mpiSupport = hdf5.mpiSupport; in buildPythonPackage rec { version = "3.1.0"; pname = "h5py"; disabled = isPy27; src = fetchPypi { inherit pname version; sha256 = "1e2516f190652beedcb8c7acfa1c6fa92d99b42331cbef5e5c7ec2d65b0fc3c2"; }; # avoid strict pinning of numpy postPatch = '' substituteInPlace setup.py \ --replace "numpy ==" "numpy >=" ''; HDF5_DIR = "${hdf5}"; HDF5_MPI = if mpiSupport then "ON" else "OFF"; postConfigure = '' # Needed to run the tests reliably. See: # https://bitbucket.org/mpi4py/mpi4py/issues/87/multiple-test-errors-with-openmpi-30 ${optionalString mpiSupport "export OMPI_MCA_rmaps_base_oversubscribe=yes"} ''; preBuild = if mpiSupport then "export CC=${mpi}/bin/mpicc" else ""; # tests now require pytest-mpi, which isn't available and difficult to package doCheck = false; checkInputs = optional isPy27 unittest2 ++ [ pytestCheckHook openssh ]; nativeBuildInputs = [ pkgconfig cython ]; buildInputs = [ hdf5 ] ++ optional mpiSupport mpi; propagatedBuildInputs = [ numpy six] ++ optionals mpiSupport [ mpi4py openssh ] ++ optionals (pythonOlder "3.8") [ cached-property ]; pythonImportsCheck = [ "h5py" ]; meta = { description = "Pythonic interface to the HDF5 binary data format"; homepage = "http://www.h5py.org/"; license = stdenv.lib.licenses.bsd2; }; }