{ stdenv, fetchzip, jdk11 }: stdenv.mkDerivation rec { pname = "igv"; version = "2.8.13"; src = fetchzip { url = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_${version}.zip"; sha256 = "0sab478jq96iw3fv0560hrrj8qbh40r8m4ncypdb7991j9haxl09"; }; installPhase = '' mkdir -pv $out/{share,bin} cp -Rv * $out/share/ sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools ln -s $out/share/igv.sh $out/bin/igv ln -s $out/share/igvtools $out/bin/igvtools chmod +x $out/bin/igv chmod +x $out/bin/igvtools ''; meta = with stdenv.lib; { homepage = "https://www.broadinstitute.org/igv/"; description = "A visualization tool for interactive exploration of genomic datasets"; license = licenses.mit; platforms = platforms.unix; maintainers = [ maintainers.mimame ]; }; }